- 获取AAV衣壳蛋白组装体的结构
pymol中使用命令:
set assembly, 1 # 设置加载模式为组装体
# set assembly, "" # 设置加载模式为单体
fetch 3ux1, assembly1, async=0 # 从PDB下载结构
- 下载FindSurfaceResidues脚本
从FindSurfaceResidues - PyMOLWiki
下载FindSurfaceResidues python脚本
使用命令:
run /path/to/findSurfaceResidues.py
findSurfaceResidues doShow=1, cutoff=2.5
findSurfaceResidues 使用方法:
findSurfaceResidues [ selection=all [, cutoff=2.5 [, doShow=0 ]]]
参数：
- selection = str: The object or selection for which to find exposed residues {default: all}
- cutoff = float: The cutoff in square Angstroms that defines exposed or not. Those atoms with > cutoff Ang^2 exposed will be considered exposed {default: 2.5 Ang^2}
- doShow = 0/1: Change the visualization to highlight the exposed residues vs interior {default: 0}
