scRNA-seq: Scanpy + AnnData - 文集

29篇文章 · 7703字 · 1人关注

sc.pl.violin()
sc.pl.violin()https://scanpy.readthedocs.io/en/stable/generated/scanpy.p...

16 0 0
sc.pl.matrixplot()
sc.pl.matrixplot()https://scanpy.readthedocs.io/en/stable/generated/scan...

26 0 1

sc.pl.dotplot()
sc.pl.dotplot()https://scanpy.readthedocs.io/en/stable/generated/scanpy....

14 0 0
sc.pl.tsne()
sc.pl.tsne()https://scanpy.readthedocs.io/en/stable/api/generated/scanpy...

14 0 0
Scanpy: merge
将两个 Scanpy object merge 在一起 objects_for_merge=[scanpy_object_used_1, sca...

101 0 0
Scanpy: 细胞周期分析
sc.tl. score_genes_cell_cyclehttps://scanpy.readthedocs.io/en/stable/gen...

24 0 0
Scanpy: 差异表达分析
Scanpy 中对两个 cluster 进行差异表达分析sc.tl.rank_genes_groups(adata, groupby="lei...

39 0 0

图形组合
# 需要绘制的 6 个变量（可更改）tsne_features = ["res_1", "res_2", "res_3", "res_4", "...

23 0 0
Scanpy: 对 cluster 进行重新命名
scanpy_object.obs['new_column_name'] = scanpy_object_used.obs['raw_colum...

23 0 0